Literature

Authors	Year	Title
J. M. Hancock, Tautz, D., Dover, G. A.	1988	Evolution of the secondary structures and compensatory mutations of the ribosomal RNAs of {\emphDrosophila melanogaster}
M. S. Blouin, Yowell, C. A., Courtney, C. H., Dame, J. B.	1998	Substitution bias, rapid saturation, and the use of mtDNA for nematode systematics.
J. Castresana	2000	Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
D. R. Denver, Morris, K., W. Thomas, K.	2003	Phylogenetics in \emph{Caenorhabditis elegans}: {An} analysis of divergence and outcrossing
M. Holterman, van der Wurff, A., van den Elsen, S., van Megen, H., Bongers, T., Holovachov, O., Bakker, J., Helder, J.	2006	Phylum-wide analysis of {SSU rDNA} reveals deep phylogenetic relationships among nematodes and accelerated evolution towards crown clades
A. Hugall, Stanton, J., Moritz, C.	1997	Evolution of the AT-rich mitochondrial DNA of the root knot nematode Meloidogyne hapla
A. Hugall, Stanton, J., Moritz, C.	1999	Reticulate evolution and the origins of ribosomal internal transcribed spacer diversity in apomictic \emph{Meloidogyne}
D. A. Morrison, Ellis J. T.	1997	Effects of nucleotide sequence alignment on phylogeny estimation: A case study of {18S} {rDNAs} of \emph{Apicomplexa}
G. K. Philip, Creevey, C. J., McInerney, J. O.	2005	The opisthokonta and the ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the coelomata than ecdysozoa
H. Philippe, Lartillot, N., Brinkmann, H.	2005	Multigene analyses of bilatarian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Prostomia
R. E. Hickson, Simon, C., Perrey, S. W.	2000	The performance of several multiple-sequence alignment programs in relation to secondary-structure features for an r{RNA} sequence
A. Sanchis, Michelena, J. M., Latorre, A., Quicke, D. L. J., Gardenfors, U., Belshaw, R.	2001	The Phylogenetic Analysis of Variable-Length Sequence Data: Elongation Factor-1$\alpha$ Introns in {European} Populations of the Parasitoid Wasp Genus \emph{Pauesia} ({Hymenoptera}: {Braconidae}: {Aphidiinae})
M. J. Telford, Wise, M. J., Gowri-Shankar, V.	2005	Consideration of {RNA} secondary structure significantly improves likelihood-based estimates of phylogeny: examples from the bilateria
W. C. Wheeler	1993	The triangle inequality and character analysis