Literature

Authorssort descendingYearTitle
R. Nielsen2002Mapping mutations on phylogenies
A. Wagner, Blackstone, N., Cartwright, P., Dick, M., Misof, B., Snow, P., Wagner, G. P., Bartels, J., Murtha, M., Pendleton, J.1994Surveys of gene families using polymerase chain reaction: PCR selection and PCR drift
R. Meier, Shiyang, K., Vaidya, G., Ng, P. K. L.2006DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success.
J. J. Bull, Huelsenbeck, J. P., Cunningham, C. W., Swofford, D. L., Waddell, P. J.1993Partitioning and combining data in phylogenetic analysis
J. J. Bull, Huelsenbeck, J. P., Cunningham, C. W., Swofford, D. L., Waddell, P. J.1993Partitioning and Combining Data in Phylogenetic Analysis
S. Cerchio, Tucker P.1998Influence of Alignment on the Mtdna Phylogeny of Cetacea - Questionable Support for a Mysticeti/Physeteroidea Clade
P. T. Chippindale, Wiens J. J.1994Weighting, Partitioning, and Combining Characters in Phylogenetic Analysis
T. M. Collins, Wimberger, P. H., Naylor, G. J. P.1994Compositional bias, character-state bias, and character-state reconstruction using parsimony
K. A. Crandall, Fitzpatrick J. F.1996Crayfish molecular systematics: Using a combination of procedures to estimate phylogeny
D. E. Critchlow, Pearl, D. K., Qian, C.1996The triples distance for rooted bifurcating phylogenetic trees
A. De Queiroz1993For consensus (sometimes)
R. Diaz-Uriarte, Garland T.1996Testing hypotheses of correlated evolution using phylogenetically independent contrasts: Sensitivity to deviations from Brownian motion
J. S. Farris, Kallersjo, M., Kluge, A. G., Bult, C.1995Constructing a significance test for incongruence
D. H. A. Fitch1997Evolution of male tail development in rhabditid nematodes related to {Caenorhabditis} elegans.
R. Fleissner, Metzler, D., von Haeseler, A.2005Simultaneous statistical multiple alignment and phylogeny reconstruction
S. W. Graham, Kohn, J. R., Morton, B. R., Eckenwalder, J. E., Barrett, S. C. H.1998Phylogenetic congruence and discordance among one morphological and three molecular data sets from {Pontederiaceae}
D. M. Hillis, Bull J. J.1993An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
D. M. Hillis1995Approaches for assessing phylogenetic accuracy
D. M. Hillis1998Taxonomic sampling, phylogenetic accuracy, and investigator bias
J. P. Huelsenbeck, Hillis D. M.1993Success of phylogenetic methods in the four-taxon case
J. P. Huelsenbeck, Hillis D. M.1993Success of Phylogenetic Methods in the 4-Taxon Case
J. P. Huelsenbeck1997Is the Felsenstein zone a fly trap?
J. P. Huelsenbeck1998Systematic bias in phylogenetic analysis: Is the Strepsiptera problem solved?
J. P. Huelsenbeck, Nielsen R.1999Effect of nonindependent substitution on phylogenetic accuracy
J. Kim1998Large-scale phylogenies and measuring the performance of phylogenetic estimators
J. Kim1998Large-Scale Phylogenies and Measuring the Performance of Phylogenetic Estimators
K. M. Kjer2004Aligned 18S and insect phylogeny
A. Knight, Mindell D. P.1993Substitution bias, weighting of DNA sequence evolution, and the phylogenetic position of Fea's viper
P. O. Lewis2001A likelihood approach to estimating phylogeny from discrete morphological character data
F. Lutzoni, Wagner, P., Reeb, V., Zoller, S.2000Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology
D. R. Maddison, Swofford, D. L., Maddison, W. P.1997Nexus: An extensible file format for systematic information
W. P. Maddison1997Gene Trees in Species Trees
R. J. Mason-Gamer, Kellogg E. A.1996Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae)
M. M. Miyamoto, Fitch W. M.1995Testing species phylogenies and phylogenetic methods with congruence
S. Poe1996Data set incongruence and the phylogeny of crocodilians
D. Posada, Buckley T. R.2004Model selection and model averaging in phylogenetics: advantages of the {AIC} and {Bayesian} approaches over likelihood ratio tests
M. J. Sanderson, Doyle J. J.1992Reconstruction of organismal and gene phylogenies from data on multigene families: concerted evolution, homoplasy, and confidence
M. J. Sanderson1995Objections to bootstrapping phylogenies: A critique
J. B. Slowinski1993Unordered Versus Ordered Characters
A. B. Smythe, Sanderson, M. J., Nadler, S. A.2006Nematode small subunit phylogeny correlates with alignment parameters
M. A. Steel, Penny D.1993Distributions of tree comparison metrics: Some new results
M. Steel, Dress, A. W. M., Böcker, S.2000Simple but fundamental limitations on supertree and consensus tree methods
W. C. Wheeler1995Sequence alignment, parameter sensitivity and the phylogenetic analysis of molecular data
J. J. Wiens1998Combining data sets with different phylogenetic histories
X. Xia, Xie, Z., Kjer, K. M.200318S ribosomal {RNA} and tetrapod phylogeny
Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith