Literature

AuthorsYearsort descendingTitle
J. M. Hancock, Tautz, D., Dover, G. A.1988Evolution of the secondary structures and compensatory mutations of the ribosomal RNAs of {\emphDrosophila melanogaster}
M. S. Blouin, Yowell, C. A., Courtney, C. H., Dame, J. B.1998Substitution bias, rapid saturation, and the use of mtDNA for nematode systematics.
J. Castresana2000Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
D. R. Denver, Morris, K., W. Thomas, K.2003Phylogenetics in \emph{Caenorhabditis elegans}: {An} analysis of divergence and outcrossing
D. H. A. Fitch, Bugaj-Gaweda, B., Emmons, S. W.199518S ribosomal RNA gene phylogeny for some Rhabditidae related to Caenorhabditis.
E. C. Holmes, Worobey, M., Rambaut, A.1999Phylogenetic evidence for recombination in Dengue virus
M. Holterman, van der Wurff, A., van den Elsen, S., van Megen, H., Bongers, T., Holovachov, O., Bakker, J., Helder, J.2006Phylum-wide analysis of {SSU rDNA} reveals deep phylogenetic relationships among nematodes and accelerated evolution towards crown clades
A. Hugall, Stanton, J., Moritz, C.1997Evolution of the AT-rich mitochondrial DNA of the root knot nematode Meloidogyne hapla
A. Hugall, Stanton, J., Moritz, C.1999Reticulate evolution and the origins of ribosomal internal transcribed spacer diversity in apomictic \emph{Meloidogyne}
B. C. Hyman, Azevedo J. L. Beck1996Similar evolutionary patterning among repeated and single copy nematode mitochondrial genes
M. Lynch, Crease T. J.1990The analysis of population survey data on DNA sequence variation
D. A. Morrison, Ellis J. T.1997Effects of nucleotide sequence alignment on phylogeny estimation: A case study of {18S} {rDNAs} of \emph{Apicomplexa}
N. B. Mugridge, Morrison, D. A., Jaekel, T., Heckeroth, A. R., Tenter, A. M., Johnson, A. M.2000Effects of sequence alignment and structural domains of ribosomal DNA on phylogeny reconstruction for the protozoan family Sarcocystidae.
S. A. Nadler1992Phylogeny of some ascaridoid nematodes, inferred from comparison of 18S and 28S rRNA sequences
G. K. Philip, Creevey, C. J., McInerney, J. O.2005The opisthokonta and the ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the coelomata than ecdysozoa
H. Philippe, Lartillot, N., Brinkmann, H.2005Multigene analyses of bilatarian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Prostomia
R. E. Hickson, Simon, C., Perrey, S. W.2000The performance of several multiple-sequence alignment programs in relation to secondary-structure features for an r{RNA} sequence
A. Rzhetsky, Kumar, S., Nei, M.1995Four-cluster analysis: A simple method to test phylogenetic hypotheses
A. Sanchis, Michelena, J. M., Latorre, A., Quicke, D. L. J., Gardenfors, U., Belshaw, R.2001The Phylogenetic Analysis of Variable-Length Sequence Data: Elongation Factor-1$\alpha$ Introns in {European} Populations of the Parasitoid Wasp Genus \emph{Pauesia} ({Hymenoptera}: {Braconidae}: {Aphidiinae})
M. J. Telford, Wise, M. J., Gowri-Shankar, V.2005Consideration of {RNA} secondary structure significantly improves likelihood-based estimates of phylogeny: examples from the bilateria
W. C. Wheeler1993The triangle inequality and character analysis
Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith