@inbook {Loytynoja2001_318,
	title = {SOAP, a program for cleaning multiple alignments from unstable blocks.},
	booktitle = {Bioinformatics},
	volume = {In press},
	year = {2001},
	author = {L{\"o}ytynoja, A. and Milinkovitch, M.C.}
}
@article {Loytynoja2003,
	title = {A hidden Markov model for progressive multiple alignment},
	journal = {Bioinformatics},
	volume = {19},
	year = {2003},
	pages = {1505{\textendash}1513},
	author = {L{\"o}ytynoja, A. and Milinkovitch, M.C.}
}
