@article {Loytynoja2001,
	title = {Molecular phylogenetic analyses of the mitochondrial {ADP-ATP} carriers: The {Plantae}/{Fungi}/{Metazoa} trichotomy revisited},
	journal = {Proceedings of the National Academy of Science},
	volume = {98},
	number = {18},
	year = {2001},
	pages = {10202{\textendash}10207},
	author = {L{\"o}ytynoja, A. and Milinkovitch, M.C.}
}
@inbook {Loytynoja2001_318,
	title = {SOAP, a program for cleaning multiple alignments from unstable blocks.},
	booktitle = {Bioinformatics},
	volume = {In press},
	year = {2001},
	author = {L{\"o}ytynoja, A. and Milinkovitch, M.C.}
}
@article {Loytynoja2003,
	title = {A hidden Markov model for progressive multiple alignment},
	journal = {Bioinformatics},
	volume = {19},
	year = {2003},
	pages = {1505{\textendash}1513},
	author = {L{\"o}ytynoja, A. and Milinkovitch, M.C.}
}
