@article {Huelsenbeck_and_Ronquist2001,
	title = {MRBAYES: Bayesian inference of phylogeny},
	journal = {Bioinformatics},
	volume = {17},
	year = {2001},
	pages = {754{\textendash}755},
	author = {Huelsenbeck, J. P. and Ronquist, F.}
}
@inbook {Loytynoja2001_318,
	title = {SOAP, a program for cleaning multiple alignments from unstable blocks.},
	booktitle = {Bioinformatics},
	volume = {In press},
	year = {2001},
	author = {L{\"o}ytynoja, A. and Milinkovitch, M.C.}
}
@article {Loytynoja2003,
	title = {A hidden Markov model for progressive multiple alignment},
	journal = {Bioinformatics},
	volume = {19},
	year = {2003},
	pages = {1505{\textendash}1513},
	author = {L{\"o}ytynoja, A. and Milinkovitch, M.C.}
}
@article {Mailund2004,
	title = {QDist - quarted distance between evolutionary trees},
	journal = {Bioinformatics},
	volume = {20},
	number = {10},
	year = {2004},
	pages = {1636-1637},
	author = {Mailund, Thomas and Pedersen, Christian N.S.}
}
@article {Posada1998,
	title = {{MODELTEST}: {Testing} the model of {DNA} substitution},
	journal = {Bioinformatics},
	volume = {14},
	year = {1998},
	pages = {817{\textendash}818},
	author = {Posada, D. and Crandall, K.A.}
}
@article {Ronquist_Huelsenbeck2003,
	title = {MRBAYES 3: Bayesian phylogenetic inference under mixed models. 19:1572-1574},
	journal = {Bioinformatics},
	volume = {19},
	year = {2003},
	pages = {1572{\textendash}1574},
	author = {Ronquist, F. and Huelsenbeck, J. P.}
}
