S.  Mathews and Donoghue, M. J., ?The root of angiosperm phylogeny inferred from duplicate phyotchrome genes?, in Science, vol. 286, 1999, pp. 947?950.

D. S.  Hibbett and Donoghue, M. J., ?INTEGRATING PHYLOGENETIC ANALYSIS AND CLASSIFICATION IN FUNGI [Review]?, in Mycologia, vol. 90, 1998, pp. 347?356.

M. J.  Sanderson and Donoghue, M. J., ?Patterns of variation in levels of homoplasy?, in Evolution, vol. 43, 1989, pp. 1781?1795.