Literature

Authors	Year	Title
R. Nielsen	2002	Mapping mutations on phylogenies
A. Wagner, Blackstone, N., Cartwright, P., Dick, M., Misof, B., Snow, P., Wagner, G. P., Bartels, J., Murtha, M., Pendleton, J.	1994	Surveys of gene families using polymerase chain reaction: PCR selection and PCR drift
R. Meier, Shiyang, K., Vaidya, G., Ng, P. K. L.	2006	DNA barcoding and taxonomy in Diptera: a tale of high intraspecific variability and low identification success.
D. H. A. Fitch	1997	Evolution of male tail development in rhabditid nematodes related to {Caenorhabditis} elegans.
R. Fleissner, Metzler, D., von Haeseler, A.	2005	Simultaneous statistical multiple alignment and phylogeny reconstruction
S. W. Graham, Kohn, J. R., Morton, B. R., Eckenwalder, J. E., Barrett, S. C. H.	1998	Phylogenetic congruence and discordance among one morphological and three molecular data sets from {Pontederiaceae}
D. M. Hillis	1995	Approaches for assessing phylogenetic accuracy
J. P. Huelsenbeck, Nielsen R.	1999	Effect of nonindependent substitution on phylogenetic accuracy
K. M. Kjer	2004	Aligned 18S and insect phylogeny
P. O. Lewis	2001	A likelihood approach to estimating phylogeny from discrete morphological character data
F. Lutzoni, Wagner, P., Reeb, V., Zoller, S.	2000	Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology
D. Posada, Buckley T. R.	2004	Model selection and model averaging in phylogenetics: advantages of the {AIC} and {Bayesian} approaches over likelihood ratio tests
M. J. Sanderson, Doyle J. J.	1992	Reconstruction of organismal and gene phylogenies from data on multigene families: concerted evolution, homoplasy, and confidence
A. B. Smythe, Sanderson, M. J., Nadler, S. A.	2006	Nematode small subunit phylogeny correlates with alignment parameters
M. A. Steel, Penny D.	1993	Distributions of tree comparison metrics: Some new results
M. Steel, Dress, A. W. M., Böcker, S.	2000	Simple but fundamental limitations on supertree and consensus tree methods
W. C. Wheeler	1995	Sequence alignment, parameter sensitivity and the phylogenetic analysis of molecular data
X. Xia, Xie, Z., Kjer, K. M.	2003	18S ribosomal {RNA} and tetrapod phylogeny